Ryan N Hoffman, Ph.D.

portrait of Ryan in a lab coat

Position Title
Postdoctoral Fellow

Bio

Dr. Ryan Hoffman is a postdoctoral research fellow pioneering the use of induced pluripotent stem cell (iPSC) derived neural cultures for studying the molecular, cellular and network mechanisms involved in psychedelic induced plasticity, and developing a scalable, high-throughput platform for neurotherapeutic preclinical evaluation of novel drugs. Ryan is also developing a versatile set of fluorescence microscopy methods aimed towards performing multichannel whole brain imaging via Lightsheet microscopy, high-content plasticity time course imaging, and developing fluorescent iPSC reporter lines for integrated plasticity evaluation. Having received his PhD in Molecular, Cellular and Developmental Biology from UC Santa Cruz, Ryan brings expertise in human and primate iPSC and ESC tissue culturing and neural patterning, fluorescence microscopy, single nucleus RNA sequencing, electrophysiology, and hydrogel engineering. In his PhD, Ryan developed a novel approach for the high-throughput and uniform application of hydrogel-based basal lamina to cerebral organoids, providing a scalable patterning approach for generating large multimodal time course datasets across various experimental conditions. This approach results in reproducible specification and developmental trajectory of cerebral cell types across various pluripotent stem cell lines and improved neuronal layer-specific subtype specification, laminar cytoarchitectural organization, and functional and molecular maturation. Additionally, Ryan developed a novel media regimen to culture cerebral organoids in a physiological glucose range throughout development, shifting their metabolic preference towards oxidative phosphorylation rather than primarily utilizing glycolysis under standard conditions. Ultimately, these approaches advance the fidelity of cerebral organoids as a model for human development and their use in translational research requiring mature subtype specified human cerebral neurons. Outside of lab, Ryan is a painter (whose work has been featured at the Santa Cruz Museum of Modern Art), craftsman, and musician. He is an avid traveler and happy to share lore over a beer. 

Education and Degree(s)
  • PhD | Molecular, Cell and Developmental Biology | UC Santa Cruz | 2025
  • BS | Neuroscience | UC Santa Cruz | 2014
Honors and Awards
  • CIRM Predoctoral Fellow | 2022 - 2025
  • Magna Cum Laude | UC Santa Cruz | 2014
  • Highest Honors | Neuroscience | UC Santa Cruz | 2014
Research Interests & Expertise
  • Neural Plasticity and Preclinical Drug Evaluation
  • Developmental Neurobiology
  • iPSC-derived Neural Culture
  • Cerebral Organoids, Choroid Plexus Organoids, and Cerebrospinal Fluid
  • Fluorescence Microcopy
  • Single Nucleus RNA Sequencing
  • Electrophysiology (MEAs)
  • Hydrogel Engineering
Publications
  • Hoffman RN, Yurevych V, Nguyen C, Gonzalez Ferrer J, Brail Q, Ozcakir D, Katzman S, Haussler D, Mostajo-Radji MA, Salama SR. A scalable approach for applying basal lamina hydrogel to neural organoids improves cerebral specificity and cytoarchitectural organization. In Preparation.
  • Hoffman RN, Yurevych V, Seiler ST, Gonzalez Ferrer J, Brail Q, Katzman S, Haussler D, Mostajo-Radji MA, Salama SR. Cerebral organoids cultured in a physiological glucose range shifts metabolism from glycolysis to oxidative phosphorylation without altering regional and cellular specificity. In Preparation
  • Saiduzzaman SM , Xu R , Neyen Sampad MJ, Hoffman RN, Seiler ST, Brail Q, Yurevych V , Walker ZJ , Wells TN, Wayment JX, Ong EM , Yuzvinsky TD , Hawkins AR, Salama SR , Teodorescu M, Haussler D, Schmidt H. Single molecule nanopore counting assay targeting small extracellular vesicle cargo for non-invasive cerebral organoid development and health. In Review.
  • Seiler ST, Mantalas GL, Selberg J, Cordero S, Torres-Montoya S, Baudin PV, Ly VT, Amend F, Tran L, Hoffman RN, Rolandi M, Green RE, Haussler D, Salama SR, Teodorescu M. Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids. Sci Rep. 2022 Nov 23;12(1):20173. Http://doi.org/10.1038/s41598-022-20096-9 
  • Baudin PV, Sacksteder RE, Worthington AK, Voitiuk K, Ly VT, Hoffman RN, Elliott MAT, Parks DF, Ward R, Torres-Montoya S, Amend F, Montellano Duran N, Vargas PA, Martinez G, Ramirez SM, Alvarado-Arnez LE, Ehrlich D, Rosen YM, Breevoort A, Schouten T, Kurniawan S, Haussler D, Teodorescu M, Mostajo-Radji MA. Cloud-controlled microscopy enables remote project-based biology education in underserved Latinx communities. Heliyon. 2022 Nov 15;8(11):e11596. Https://doi.org/10.1016/j.heliyon.2022.e11596 
  • Baudin PV, Ly VT, Pansodtee P, Jung EA, Currie R, Hoffman R, Willsey HR, Pollen AA, Nowakowski TJ, Haussler D, Mostajo-Radji MA, Salama SR, & Teodorescu M. Low cost cloud based remote microscopy for biological sciences. Internet of Things. 2021 Aug 17;18(1):e100454. https://doi.org/10.1016/j.iot.2021.100454
  • Ly VT, Ehrlich D, Sevetson JL, Hoffman RN, Salama SR, Kurniawan S, Teodorescu M. 2024. Gamifying Cell culture training: The ‘seru-otchi’ experience for undergraduates. Heliyon 10, 9 (May 2024). https://doi.org/10.1016/j.heliyon.2024.e30469
Membership and Service
  • International Society for Stem Cell Research
  • California Institute for Regenerative Medicine (CIRM) Alumni